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Projects

Things I build and maintain.

Open-source frameworks, molecular tooling and AI products. Some are public, some are not, all of them started as a problem I wanted solved.

Open source

MolFun

Protein structure fine-tuning

Open-source framework for adapting pre-trained protein structure prediction models, with four fine-tuning strategies and a modular registry.

  • PyTorch
  • CUDA
  • Triton

Nomosis

Molecular intelligence platform

AI agents, molecular dynamics and drug discovery in one ecosystem: pose and trajectory viewers, research notebooks, HPC orchestration.

  • AI Agents
  • MD
  • HPC
Private

CodeMol

Console-first protein viewer

Desktop 3D molecular rendering driven by a terminal, with 200+ tools and LLM agent routing.

  • Python
  • WebSocket
Open source

Agent Skills

Skills for Claude Code

Production-tested skills encoding best practices for backend, web, testing and security work.

  • TypeScript
  • MCP
Launching May 2026

Novachef

AI cooking assistant

Mobile app with 3000+ recipes, a RAG-backed assistant, shopping lists and menu planning.

  • RAG
  • Mobile
rubencr.com

Engineering intelligence with performance and alignment at the core.

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Focus areas

  • AI Engineering
  • Computational Biology
  • Physics & Mathematics
  • Selected work

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  • hello@rubencr.com
  • Based in Europe
  • Time zone CET (UTC+1)

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