Desktop application

CodeMol
Console-First Viewer

A desktop protein visualization app that pairs 3D molecular rendering with a terminal-style command console. 200+ tools, AI agent integration and real-time collaborative sessions.

Python
3D Rendering
WebSocket
AI Agents
Private

CodeMol Viewer

Key capabilities

Console-First Interaction

A command console replaces GUI menus, with tab completion and history for every molecular operation.

200+ Discoverable Tools

Across 27+ groups: visualization, selection, measurement, structural analysis and file I/O, all behind one run() interface.

AI Agent Integration

Natural language interaction via LLM agents, with specialist routing for docking and trajectory analysis.

Multi-Structure Workflows

Load, overlay, align and compare several structures at once, with automatic command scoping.

Collaborative Sessions

Real-time collaboration over a WebSocket relay: hosts broadcast actions to multiple viewers.

Type what you mean, see it immediately

Menus make simple things easy and complex things impossible. A console makes both tractable: every operation is a command, commands compose, and the whole session is reproducible as text.